The folder called "logos", extract that.
and take the folder called "fc scout"(which contains 3 different type of logos, bg, normal and small). put the folder "fc scout" into this directory:
"Documents\Sports Interactive\Football Manager 2009\graphics\logos " (if you dont have a folder called logos you have to create one).
The database can be found here: http://fmscout.com/i-575-FC-Scout-database.html
Credit to Stam for the Logos.